EDP Sciences logo
Search
Menu
All issues Volume 7 / No 1 (January-March 2008) Environ. Biosafety Res., 7 1 (2008) 25-33 References
Free Access
Issue
Environ. Biosafety Res.
Volume 7, Number 1, January-March 2008
Page(s) 25 - 33
DOI https://doi.org/10.1051/ebr:2007047
Published online 03 April 2008
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J. Mol. Biol. 215: 403–410 [Google Scholar]
  • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1994) Current protocols in molecular biology. John Wiley and Sons, eds, USA [Google Scholar]
  • Brookes G, Barfoot P (2006) GM Crops: The First Ten Years - Global Socio-Economic and Environmental Impacts. ISAAA Brief No. 36, ISAAA: Ithaca, NY [Google Scholar]
  • Brusetti L, Francia P, Bertolini C, Pagliuca A, Borin S, Sorlini C, Abruzzese A, Sacchi G, Viti C, Giovannetti L, Giuntini E, Bazzicalupo M, Daffonchio D (2004) Bacterial communities associated with the rhizosphere of transgenic Bt176 maize Zea mays and its non transgenic counterpart. Plant Soil 266: 11–26 [CrossRef] [Google Scholar]
  • Brusetti L., Borin S, Mora D, Rizzi A, Raddadi N, Sorlini C, Daffonchio D (2006) Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling. FEMS Microbiol. Ecol. 56: 154–164 [CrossRef] [PubMed] [Google Scholar]
  • Cai Y, Benno Y, Ogawa M, Ohmomo S, Kumai S, Nakase T (1998) Influence of Lactobacillus spp. from an inoculant and of Weissella and Leuconostoc spp. from forage crops on silage fermentation. Appl. Environ. Microbiol. 64: 2982–2987 [PubMed] [Google Scholar]
  • Cai, Y, Kumai S, Ogawa M, Benno Y, Nakase T (1999) Characterization and identification of Pediococcus species isolated from forage crops and their application for silage preparation. Appl. Environ. Microbiol. 65: 2901–2906 [PubMed] [Google Scholar]
  • Cardinale M, Brusetti L, Quatrini P, Borin S, Puglia AM, Rizzi A, Zanardini E, Sorlini C, Corselli C, Daffonchio D (2004) Comparison of different primer sets for the Automated Ribosomal Intergenic Spacer Analysis (ARISA) of complex bacterial communities. Appl. Environ. Microbiol. 70: 6147–6156 [CrossRef] [PubMed] [Google Scholar]
  • Chiarini L, Bevivino A, Dalmastri C, Nacamulli C, Tabacchioni S (1998) Influence of plant development, cultivar and soil type on microbial colonisation of maize roots. Appl. Soil Ecol. 8: 11–18 [CrossRef] [Google Scholar]
  • Costa R, Götz M, Mrotzek N, Lottmann J, Berg G, Smalla K (2006) Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol. Ecol. 56: 236–249 [CrossRef] [PubMed] [Google Scholar]
  • Daffonchio D, Borin S, Frova G, Manichini PL, Sorlini C (1998) PCR fingerprinting of whole genomes, the spacers between the 16S and 23S rRNA genes and of intergenic tRNA gene regions reveals a different intraspecific genomic variability of Bacillus cereus and Bacillus licheniformis. Int. J. Syst. Bacteriol. 48: 107–116 [CrossRef] [PubMed] [Google Scholar]
  • Di Giovanni GD, Watrud LS, Seidler RJ, Widmer F (1999) Comparison of parental and transgenic alfalfa rhizosphere bacterial communities using Biolog GN metabolic fingerprinting and enterobacterial repetitive intergenic consensus sequence-PCR (ERIC-PCR). Microb. Ecol. 37: 129–139 [CrossRef] [PubMed] [Google Scholar]
  • Dunfield KE, Germida JJ (2001) Diversity of bacterial communities in the rhizosphere and root interior of field-grown genetically modified Brassica napus. FEMS Microbiol. Ecol. 38: 1–9 [CrossRef] [Google Scholar]
  • Escher N, Käch B, Nentwig W (2000) Decomposition of transgenic Bacillus thuringiensis maize by microorganisms and woodlice Porcellio scaber (Crustacea: Isopoda). Basic Appl. Ecol. 1: 161–169 [CrossRef] [Google Scholar]
  • Fisher MM, Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65: 4630–4636 [PubMed] [Google Scholar]
  • Gomes NCM, Heuer H, Schönfeld J, Costa R, Medonça-Hagler L, Smalla K (2001) Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232: 167–180 [CrossRef] [Google Scholar]
  • Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour C, Andersen MN, Cortet J, Messé A, Sausse C, Lacroix B, Krogh PH (2005) A comparison of soil microbial community structure, protozoa and nematodes in field plots of conventional and genetically modified maize expressing the Bacillus thuringiensis CryIAb toxin. Plant Soil 275: 135–146 [CrossRef] [Google Scholar]
  • Gyamfi S, Pfeifer U, Stierschneider M, Sessitsch A (2002) Effects of transgenic gluphosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere. FEMS Microbiol. Ecol. 41: 181–190 [Google Scholar]
  • Heuer H, Kroppenstedt RM, Lottmann J, Berg G, Smalla K (2002) Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl. Environ. Microbiol. 68: 1325–1335 [CrossRef] [PubMed] [Google Scholar]
  • Koziel MG, Beland GL, Bowman C, Carozzi NB, Crenshaw R, Crossland L, Dawson J, Desai N, Hill M, Kadwell S, Launis K, Lewis K, Maddox D, McPherson K, Meghji MR, Merlin E, Rhodes R, Warren GW, Wright M, Evola SV (1993) Field performance of elite transgenic maize plants expressing an insecticidal protein derived from Bacillus thuringiensis. Bio-Technol. 11: 194–200 [Google Scholar]
  • Lin C, Bolsen KK, Brent BE, Hart RA, Dickerson JT, Feyerherm AM, Aimutis WR (1991) Epiphytic microflora on alfalfa and whole-plant corn. J. Dairy Sci. 75: 2484–2493 [CrossRef] [Google Scholar]
  • Lin C, Bolsen KK, Brent BE, Fung DYC (1992) Epiphytic lactic acid bacteria succession during the pre-ensiling and ensiling periods of alfalfa and maize. J. Appl. Bacteriol. 73: 375–387 [Google Scholar]
  • Nielsen KM, Bones AT, Smalla K, van Elsas JD (1998) Horizontal gene transfer from transgenic plants to terrestrial bacteria – a rare event? FEMS Microbiol. Rev. 22: 79–103 [PubMed] [Google Scholar]
  • Ritchie NJ, Schutter ME, Dick RP, Myrold DD (2000) Use of Length Heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Appl. Environ. Microbiol. 66: 1668–1675 [CrossRef] [PubMed] [Google Scholar]
  • Rizzi A, Agosti F, Daffonchio D, Sorlini C (2001) Detection of genetically modified Bt-maize in cooked food products by PCR. Ital. J. Food Sci. 13: 265–274 [Google Scholar]
  • Rizzi A, Panebianco L, Giaccu D, Sorlini C, Daffonchio D (2003) Stability and recovery of maize DNA during food processing. Ital. J. Food Sci. 15: 499–510 [Google Scholar]
  • Saxena D, Stotzky G (2001) Bt corn has a higher lignin content than non-Bt corn. Am. J. Bot. 88: 1704–1706 [CrossRef] [PubMed] [Google Scholar]
  • Saxena D, Flores S, Stotzky G (1999) Insecticidal toxin in root exudates from Bt corn. Nature 402: 480 [PubMed] [Google Scholar]
  • Siciliano SD, Germida JJ (1999) Taxonomic diversity of bacteria associated with the roots of field-grown transgenic Brassica napus cv. Quest, compared to the non-transgenic B. napus cv. Excel and B. rapa cv. Parkland. FEMS Microbiol. Ecol. 29: 263–272 [CrossRef] [Google Scholar]
  • Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67: 4742–4751 [CrossRef] [PubMed] [Google Scholar]
  • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S, Wernars K (2001) Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67: 2284–2291 [Google Scholar]
  • Suzuki M, Rappé MS, Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64: 4522–4529 [PubMed] [Google Scholar]
  • Tukey JW (1949) Comparing individual means in the analysis of variance. Biometrics 5: 99–114 [CrossRef] [MathSciNet] [PubMed] [Google Scholar]
  • Urzì C, Brusetti L, Salamone P, Sorlini C, Stackebrandt E, Daffonchio D (2001) Biodiversity of Geodermatophilaceae isolated from altered stones and monuments in the Mediterranean basin. Environ. Microbiol. 3: 471–479 [CrossRef] [PubMed] [Google Scholar]
  • Weinberg ZG, Muck RE (1996) New trends and opportunities in the development and use of inoculants for silage. FEMS Microbiol. Rev. 19: 53–68 [Google Scholar]