Free Access
Environ. Biosafety Res.
Volume 6, Number 1-2, January-June 2007
Thematic Issue on Horizontal Gene Transfer
Page(s) 55 - 69
Published online 12 September 2007
  • Arber W (2000) Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol. Rev. 24: 1–7 [CrossRef] [PubMed] [Google Scholar]
  • Asai T, Condon CN, Voulgaris J, Zaporojets D, Shen B, Al-Omar M, Squires C, Squires CI (1999) Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons. J. Bacteriol. 181: 3803–3809 [Google Scholar]
  • Beck E, Ludwig G, Auerswald EA, Reiss B, Schaller H (1982) Nucleotide sequence and exact localization of the neomycin phosphotransferase gene from transposon Tn5. Gene 19: 327–336 [Google Scholar]
  • Bertolla F, Van Gijsegem F, Nesme X, Simonet P (1997) Conditions for natural transformation of Ralstonia solanacearum. Appl. Environ. Microbiol. 63: 4965–4968 [Google Scholar]
  • Dasgupta C, Radding CM (1982) Polar branch migration promoted by RecA-protein - effect of mismatched base-pairs. Proc. Natl. Acad. Sci. USA 79: 762–766 [Google Scholar]
  • Davidoff-Abelson R, Dubnau D (1973) Conditions affecting the isolation from transformed cells of Bacillus subtilis of high molecular weight single-stranded deoxyribonucleic acid of donor origin. J. Bacteriol. 116: 146–53 [Google Scholar]
  • de Vries J, Wackernagel WM (2002) Integration of foreign DNA during natural transformation of Acinetobacter sp. by homology-facilitated illegitimate recombination. Proc. Natl. Acad. Sci. USA 99: 2094–2099 [Google Scholar]
  • Elhai J (1993) Strong and regulated promoters in the cyanobacterium Anabaena PCC 7120. FEMS Microbiol. Lett. 114: 179–184 [Google Scholar]
  • Fry JC (1993) Biological Data Analysis: A Practical Approach, IRL Press, Oxford. [Google Scholar]
  • Gebhard F, Smalla K (1998) Transformation of Acinetobacter sp. strain BD413 by transgenic sugar beet DNA. Appl. Environ. Microbiol. 64: 1550–1554 [Google Scholar]
  • Gerischer U, Ornston LN (2001) Dependence of linkage of alleles on their physical distance in natural transformation of Acinetobacter sp. strain ADP1. Arch. Microbiol. 176: 465–469 [Google Scholar]
  • Gralton EM, Campbell AL, Neidle EL (1997) Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. Microbiology 143: 1345–1357 [Google Scholar]
  • Heim R, Prasher DC, Tsien RY (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc. Natl. Acad. Sci. USA 91: 12501–12504 [Google Scholar]
  • Heinemann JA, Traavik T (2004) Problems in monitoring horizontal gene transfer in field trials of transgenic plants. Nat. Biotechnol. 22: 1105–1109 [Google Scholar]
  • Juni E (1972) Interspecies transformation of Acinetobacter: genetic evidence for a ubiquitous genus. J. Bacteriol. 112: 917–931 [Google Scholar]
  • Juni E, Janik A (1969) Transformation of Acinetobacter calcoaceticus (Bacterium anitratum). J. Bacteriol. 98: 281–288 [Google Scholar]
  • Khasanov FK, Zhvingila DJ, Zailhudlin AA, Prozorov AA, Bashkirov VI (1992) Homologous recombination between plasmid and chromosomal DNA in Bacillus subtilis requires approximately 70 bp of homology. Mol. Gen. Genet. 234: 494–497 [Google Scholar]
  • Koonin EV, Makarova KS, Aravind L (2001) Horizontal gene transfer in prokaryotes: quantification and classification. Ann. Rev. Microbiol. 55: 709–742 [Google Scholar]
  • Li X, Zhang G, Ngo N, Zhao X, Kain SR (1997) Deletions of the Aequorea victoria green fluorescent protein define the minimal domain required for fluorescence. J. Biol. Chem. 272: 28545–28549 [Google Scholar]
  • Lorenz MG, Wackernagel WM (1994) Bacterial gene-transfer by natural genetic-transformation in the environment. Microbiol. Rev. 58: 563–602 [Google Scholar]
  • Majewski J, Zawadzki P, Pickerell P, Cohan FM, Dowson CG (2000) Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J. Bacteriol. 182: 1016–1023 [Google Scholar]
  • Nielsen KM, Townsend JP (2004) Monitoring and modelling horizontal gene transfer. Nat. Biotechnol. 22: 1110–1114 [Google Scholar]
  • Nielsen KM, van Weerelt MDM, Berg TN, Bones AM, Hagler AN, Van Elsas JD (1997) Natural transformation and availability of transforming DNA to Acinetobacter calcoaceticus in soil microcosms. Appl. Environ. Microbiol. 63: 1945–1963 [Google Scholar]
  • Palmen R, Hellingwerf KJ (1997) Uptake and processing of DNA by Acinetobacter calcoaceticus – a review. Gene 192: 179–190 [Google Scholar]
  • Palmen R, Vosman B, Buijsman P, Breek CKD, Hellingwerf KJ (1993) Physiological characterisation of natural transformation in Acinetobacter calcoaceticus. J. Gen. Microbiol. 139: 295–305 [Google Scholar]
  • Pettersen A-K, Bøhn T, Primicero R, Shorten P, Soboleva T, Nielsen KM (2005) Modelling suggests frequency estimates are not informative for predicting the long-term effects of horizontal gene transfer in bacteria. Environ. Biosafety Res. 4: 223–233 [Google Scholar]
  • Pifer ML, Smith HO (1985) Processing of donor DNA during Haemophilus influenzae transformation: analysis using a model plasmid system. Proc. Natl. Acad. Sci. USA 82: 3731–3735 [Google Scholar]
  • Rochelle PA, Day MJ, Fry JC (1988) Occurrence, transfer and mobilisation in epilithic strains of Acinetobacter of mercury-resistance plasmids capable of transformation. J. Gen. Microbiol. 134: 2933–2941 [Google Scholar]
  • Shen P, Huang HV (1986) Homologous recombination in Escherichia coli: Dependence on substrate length and homology. Genetics 112: 441–457 [Google Scholar]
  • Stahl FW, Crasemann JM, Stahl MM (1975) Rec-mediated recombinational hot spot activity in bacteriophage lambda. III. Chi mutations are site-mutations stimulating rec-mediated recombination. J. Mol. Biol. 94: 203–212 [Google Scholar]
  • Strätz M, Mau M, Timmis KN (1996) System to study horizontal gene exchange among microorganisms without cultivation of recipients. Mol. Microbiol. 22: 207–215 [Google Scholar]
  • Thomas CM, Nielsen KM (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Microbiol. Rev. 3: 711–721 [Google Scholar]
  • Timms-Wilson TM, Bailey MJ (2001) Reliable use of green fluorescent protein in fluorescent pseudomonads. J. Microbiol. Meth. 46: 77–80 [Google Scholar]
  • Vaneechoutte M, Young DM, Ornston LN, De Baere T, Tanny AN, van Der Reijden EC, Tjernberg I, Dijkshoorn L (2006) Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi. Appl. Environ. Microbiol. 72: 932–936 [Google Scholar]
  • Watt VM, Ingles JC, Urdea MS, Rutter WJ (1985) Homology requirements for recombination in Escherichia coli. Proc. Natl. Acad. Sci. USA 82: 4768–4772 [Google Scholar]
  • West SHE, Schweizer HP, Dall C, Sample AK, Runyen-Janecky LJ (1994) Construction of improved Escherichia-Pseudomonas shuttle vectors derived from pUC18/19 and sequence of the region required for their replication in Pseudomonas aeruginosa. Gene 148: 81–86 [Google Scholar]
  • Williams HG, Day MJ, Fry JC, Stewart GJ (1996) Natural transformation in river epilithon. Appl. Environ. Microbiol. 62: 2994–2998 [Google Scholar]