Free Access
Issue
Environ. Biosafety Res.
Volume 5, Number 1, January-March 2006
Page(s) 47 - 56
DOI https://doi.org/10.1051/ebr:2006013
Published online 19 September 2006
  • Aaziz R, Tepfer M (1999) Recombination in RNA viruses and in virus-resistant transgenic plants. J. Gen. Virol. 80: 1339–1346 [PubMed]
  • aus dem Siepen M, Pohl JO, Koo B-J, Wege C, Jeske H (2005) Poinsettia latent virus is not a cryptic virus, but a natural polerovirus-sobemovirus hybrid. Virology 336: 240–250 [CrossRef] [PubMed]
  • Bousalem M, Douzery EJP, Fargette D (2000) High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. J. Gen. Virol. 81: 243–255 [PubMed]
  • Cervera MT, Riechmann JL, Martin MT, Garcia JA (1993) 3’-terminal sequence of the Plum pox virus PS and o6 isolates: evidence for RNA recombination within the potyvirus group. J. Gen. Virol. 74: 329–334 [CrossRef] [PubMed]
  • Chare ER, Holmes EC (2006) A phylogenetic survey of recombination frequency in plant RNA viruses. Arch. Virol. 151: 933–946 [CrossRef] [PubMed]
  • Cheng C-P, Panavas T, Luo G, Nagy PD (2005) Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus RNA-dependent RNA polymerase: implication for modular evolution of RNA viruses. Virology 341: 107–121 [CrossRef] [PubMed]
  • D’Arcy CJ, Domier LL (2005) Family Luteoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, eds, Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses, Elsevier, pp 891–900
  • Desbiez C, Lecoq H (2004) The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5’ part of the genome. Arch. Virol. 149: 1619–1632 [PubMed]
  • Desvoyes B, Scholthof HB (2002) Host-dependent recombination of a Tomato bushy stunt virus coat protein mutant yields truncated capsid subunits that form virus-like complexes which benefit systemic spread. Virology 304: 434–442 [CrossRef] [PubMed]
  • De Wispelaere M, Gaubert S, Trouilloud S, Belin C, Tepfer M (2005) A map of diversity of RNA3 recombinants appearing in plants infected with Cucumber mosaic virus and Tomato aspermy virus. Virology 331: 117–127
  • Dietrich C, Maiss E (2003) Fluorescent labeling reveals spatial separation of potyvirus populations in mixed infected Nicotiana benthamiana plants. J. Gen. Virol. 84: 2871–2876 [CrossRef] [PubMed]
  • Divéki Z, Salánki K, Balázs E (2002) Limited utility of blue fluorescent protein in monitoring plant virus movement. Biochimie 84: 997–1002 [CrossRef] [PubMed]
  • Dzianott A, Bujarski JJ (2004) Infection and RNA recombination of Brome mosaic virus in Arabidopsis thaliana. Virology 318: 482–492
  • Fanigliulo A, Comes S, Pacella R, Harrach B, Martin DP, Crescenzi A (2005) Characterization of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY. Arch. Virol. 150: 709–720 [CrossRef] [PubMed]
  • Fargette D, Pinel A, Abubakar Z, Traoré O, Brugidou C, Fatogoma S, Hébrard E, Choisy M, Séré Y, Fauquet C, Konaté G (2004) Inferring the evolutionary history of Rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies. J. Virol. 78: 3252–3261 [CrossRef] [PubMed]
  • Garcia-Arenal F, Fraile A, Malpica JM (2001) Variability and genetic structure of plant virus populations. Annu. Rev. Phytopathol. 39: 157–186 [CrossRef] [PubMed]
  • Gibbs MJ, Cooper JI (1995) A recombinational event in the history of luteoviruses probably induced by base-pairing between the genomes of two distinct viruses. Virology 206: 1129–1132 [CrossRef] [PubMed]
  • Hull R (2002) Matthew’s Plant Virology, Academic Press, pp 352–372, 746–812
  • Hull R, Fargette D (2005) Genus Sobemovirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, eds, Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses, Elsevier, pp 885–890
  • Hull R, Plaskitt A (1970) Electron microscopy on the behavior of two strains of alfalfa mosaic virus in mixed infections. Virology 42: 773–776 [CrossRef] [PubMed]
  • Logemann J, Schell J, Willmitzer L (1987) Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163: 16–20 [CrossRef] [PubMed]
  • Lokesh GL, Gopinath K, Sateshkumar PS, Savithri HS (2001) Complete nucleotide sequence of Sesbania mosaic virus: a new virus species of the genus Sobemovirus. Arch. Virol. 146: 209–223
  • Mäkinen K, Tamm T, Næss V, Truve E, Puurand Ü, Munthe T, Saarma M (1995) Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence comparison with related viruses. J. Gen. Virol. 76: 2817–2825 [CrossRef] [PubMed]
  • Mäkinen K, Generozov E, Arshava N, Kaloshin A, Morozov S, Zavriev S (2000) Detection and characterization of defective interfering RNAs associated with cocksfoot mottle sobemovirus. Mol. Biol. (Moscow) 34: 291–296
  • Martin RR, Keese PK, Young MJ, Waterhouse, PM, Gerlach WL (1990) Evolution and molecular biology of luteoviruses. Annu. Rev. Phytopathol. 28: 341–363 [CrossRef]
  • Mayo MA, Jolly CA (1991) The 5’-terminal sequence of potato leafroll virus RNA: evidence of recombination between virus and host RNA. J. Gen. Virol. 72: 2591–2595 [CrossRef] [PubMed]
  • Mayo MA, Ziegler-Graff V (1996) Molecular biology of luteoviruses. Adv. Virus Res. 46: 413–460 [CrossRef] [PubMed]
  • McKinney HH (1929) Mosaic disease in Canary Islands, West Africa and Gibraltar. J. Agr. Res. 39: 557–578
  • Meier M, Paves H, Olspert A, Tamm T, Truve E (2006) P1 protein of Cocksfoot mottle virus is indispensable for systemic spread of the virus. Virus Genes 32: 321–326 [CrossRef] [PubMed]
  • Miller WA, Koev G (2000) Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology 273: 1–8 [CrossRef] [PubMed]
  • Miller WA, Rasochova L (1997) Barley yellow dwarf viruses. Annu. Rev. Phytopathol. 35: 167–190 [CrossRef] [PubMed]
  • Moonan F, Mirkov TE (2002) Analyses of genotypic diversity among North, South, and Central American isolates of Sugarcane yellow leaf virus: evidence for Colombian origins and for intraspecific spatial phylogenetic variation. J. Virol. 76: 1339–1348 [CrossRef] [PubMed]
  • Moonan F, Molina J, Mirkov TE (2000) Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology 269: 156–171 [CrossRef] [PubMed]
  • Ohshima K, Yamaguchi Y, Hirota R, Hamamoto T, Tomimura K, Tan Z, Sano T, Azuhata F, Walsh JA, Fletcher J, Chen J, Gera A, Gibbs A (2002) Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J. Gen. Virol. 83: 1511–1521 [PubMed]
  • Panaviene Z, Nagy PD (2003) Mutations in the RNA-binding domains of tombusvirus replicase protein affect RNA recombination. Virology 317: 359–372 [CrossRef] [PubMed]
  • Roossinck M (2005) Symbiosis versus competition in plant virus evolution. Nat. Rev. Microbiol. 3: 917–924 [CrossRef] [PubMed]
  • Serjeant EP (1964) Cocksfoot mottle virus. Plant Pathol. 13: 23–24
  • Serviene E, Shapka N, Cheng C-P, Panavas T, Phuangrat B, Baker J, Nagy PD (2005) Genome-wide screen identifies host genes affecting viral RNA recombination. Proc. Natl. Acad. Sci. USA 102: 10545–10550 [CrossRef]
  • Serviene E, Jiang Y, Cheng C-P, Baker J, Nagy PD (2006) Screening of the yeast yTHC collection identifies essential host factors affecting tombusvirus RNA recombination. J. Virol. 80: 1231–1241 [CrossRef] [PubMed]
  • Shapka N, Nagy PD (2004) The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: implications for the mechanism of RNA recombination. J. Virol. 78: 2288–2300 [CrossRef] [PubMed]
  • Suzuki M, Hibi T, Masuta C (2003) RNA recombination between cucumoviruses: possible role of predicted stem-loop structures and an internal subgenomic promoter-like motif. Virology 306: 77–86 [CrossRef] [PubMed]
  • Tamm T (2000) Cocksfoot mottle virus: the genome organisation and translational strategies. PhD thesis. University of Tartu, Estonia
  • Tamm T, Truve E (2000) Sobemoviruses. J. Virol. 74: 6231–6241 [CrossRef] [PubMed]
  • Tan Z, Wada Y, Chen J, Ohshima K (2004) Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus. J. Gen. Virol. 85: 2683–2696
  • Tatusova TA, Madden TL (1999) Blast 2 sequences – a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247–250 [CrossRef] [PubMed]
  • Toriyama S, Mikoshiba Y, Doi Y (1983) Ryegrass mottle virus, a new virus from Lolium multiflorum in Japan. Ann. Phytopathol. Soc. Japan 49: 610
  • White KA, Morris TJ (1999) Defective and defective interfering RNAs of monopartite plus-strand RNA plant viruses. Curr. Top. Microbiol. 239: 1–17
  • White KA, Nagy PD (2004) Advances in the molecular biology of tombusviruses: gene expression, genome replication and recombination. Prog. Nucleic Acid Res. 78: 187–226 [CrossRef]
  • Worobey M, Holmes EC (1999) Evolutionary aspects of recombination in RNA viruses. J. Gen. Virol. 80: 2535–2543 [PubMed]
  • Yao N, Imai S, Tada Y, Nakayashiki H, Tosa Y, Park P, Mayama S (2002) Apoptotic cell death is a common response to pathogen attack in oats. Mol. Plant Microbe Int. 15: 1000–1007 [CrossRef]
  • Zhong Y, Guo A, Li C, Zhuang B, Lai M, Wei C, Luo J, Li Y (2005) Identification of a naturally occurring recombinant isolate of Sugarcane mosaic virus causing maize dwarf mosaic disease. Virus Genes 30: 75–83 [CrossRef] [PubMed]