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All issues Environ. Biosafety Res., 6 1-2 (2007) 37-53 Article references

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Cell-Free DNA: An Underestimated Source of Antibiotic Resistance Gene Dissemination at the Interface Between Human Activities and Downstream Environments in the Context of Wastewater Reuse

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Abalone Withering Syndrome Disease Dynamics: Infectious Dose and Temporal Stability in Seawater

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Zhengshuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke and Olga Zhaxybayeva
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Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link

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Enumeration of exoelectrogens in microbial fuel cell effluents fed acetate or wastewater substrates

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Fate of Environmental Proteins (eProteins) from Genetically Engineered Crops in Streams is Controlled by Water pH and Ecosystem Metabolism

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Optimization, validation, and application of a real-time PCR protocol for quantification of viable bacterial cells in municipal sewage sludge and biosolids using reporter genes and Escherichia coli

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Lina Wallmann, Jörg Krampe, Josef Lahnsteiner, Elena Radu, Pierre van Rensburg, Katarzyna Slipko, Markus Wögerbauer and Norbert Kreuzinger
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Mechanisms of ultraviolet disinfection and chlorination of Escherichia coli: Culturability, membrane permeability, metabolism, and genetic damage

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Journal of Environmental Sciences 65 356 (2018)
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Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

Philip Francis Thomsen and Eske Willerslev
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Plant sedimentary DNA as a proxy for vegetation reconstruction in eastern and northern Asia

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Environmentally-relevant concentrations of Al(III) and Fe(III) cations induce aggregation of free DNA by complexation with phosphate group

Chao Qin, Fuxing Kang, Wei Zhang, Weijun Shou, Xiaojie Hu and Yanzheng Gao
Water Research 123 58 (2017)
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Using the heat generated from electrically conductive concrete slabs to reduce antibiotic resistance in beef cattle manure

Zachery R. Staley, Christopher Y. Tuan, Kent M. Eskridge and Xu Li
Science of The Total Environment 768 144220 (2021)
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Environmental dissolved DNA harbours meaningful biological information on microbial community structure

Borja Aldeguer‐Riquelme, María Dolores Ramos‐Barbero, Fernando Santos and Josefa Antón
Environmental Microbiology (2021)
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The Molecular Information About Deadwood Bacteriomes Partly Depends on the Targeted Environmental DNA

Maraike Probst, Judith Ascher-Jenull, Heribert Insam and María Gómez-Brandón
Frontiers in Microbiology 12 (2021)
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Comparison of picoeukaryote community structures and their environmental relationships between summer and autumn in the southern Chukchi Sea

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A vertically and temporally diverse bacterial community in a shallow lake-water sediment site of a eutrophic lake

Stefanos Moschos, Odysseas Piperagkas and Hera Karayanni
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Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco

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Stress-Induced, Highly Efficient, Donor Cell-Dependent Cell-to-Cell Natural Transformation in Bacillus subtilis

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Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

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Stress- and Growth Rate-Related Differences between Plate Count and Real-Time PCR Data during Growth of Listeria monocytogenes

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Applied and Environmental Microbiology 75 (7) 2132 (2009)
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Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

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Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast‐flowing, river‐dominated estuary

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Dynamics of Whole and Lysed Bacterial Cells during Parmigiano-Reggiano Cheese Production and Ripening

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Critical considerations for the application of environmental DNA methods to detect aquatic species

Caren S. Goldberg, Cameron R. Turner, Kristy Deiner, Katy E. Klymus, Philip Francis Thomsen, Melanie A. Murphy, Stephen F. Spear, Anna McKee, Sara J. Oyler‐McCance, Robert Scott Cornman, Matthew B. Laramie, Andrew R. Mahon, Richard F. Lance, David S. Pilliod, Katherine M. Strickler, Lisette P. Waits, Alexander K. Fremier, Teruhiko Takahara, Jelger E. Herder, Pierre Taberlet and M. Gilbert
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Mita Eva Sengupta, Micaela Hellström, Henry Curtis Kariuki, Annette Olsen, Philip Francis Thomsen, Helena Mejer, Eske Willerslev, Mariam Mwanje, Henry Madsen, Thomas Krogsgaard Kristensen, Anna-Sofie Stensgaard and Birgitte Jyding Vennervald
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Olivier Laroche, Oliver Kersten, Craig R. Smith and Erica Goetze
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Extracellular DNA (eDNA): Neglected and Potential Sources of Antibiotic Resistant Genes (ARGs) in the Aquatic Environments

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Effects of Microbial Activity and Environmental Parameters on the Degradation of Extracellular Environmental DNA from a Eutrophic Lake

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Prevalence and seasonal dynamics of blaCTX-M antibiotic resistance genes and fecal indicator organisms in the lower Lahn River, Germany

Ilona Herrig, Susanne Fleischmann, Julia Regnery, Jessica Wesp, Georg Reifferscheid, Werner Manz and Axel Cloeckaert
PLOS ONE 15 (4) e0232289 (2020)
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Preservation of sedimentary plant DNA is related to lake water chemistry

Weihan Jia, Xingqi Liu, Kathleen R. Stoof‐Leichsenring, Sisi Liu, Kai Li and Ulrike Herzschuh
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Containment of a genetically modified microorganism by an activated sludge system

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Sexual Isolation in Acinetobacter baylyi Is Locus-Specific and Varies 10,000-Fold Over the Genome

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Occurrence of antibiotic resistant bacteria and resistance genes in agricultural irrigation waters from Valencia city (Spain)

Michela Amato, Diego Dasí, Ana González, María Antonia Ferrús and María Ángeles Castillo
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Use of environmental DNA in early detection of Mnemiopsis leidyi in UK coastal waters

Véronique Créach, Sabrine Derveaux, Katy R. Owen, Sophie Pitois and Elvire Antajan
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Artificial sweeteners stimulate horizontal transfer of extracellular antibiotic resistance genes through natural transformation

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Blood Bacteria-Free DNA in Septic Mice Enhances LPS-Induced Inflammation in Mice through Macrophage Response

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Survival of Host-Associated Bacteroidales Cells and Their Relationship with Enterococcus spp., Campylobacter jejuni, Salmonella enterica Serovar Typhimurium, and Adenovirus in Freshwater Microcosms as Measured by Propidium Monoazide-Quantitative PCR

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Evaluation of Different Methods for Extracting Extracellular DNA from the Biofilm Matrix

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Applied and Environmental Microbiology 75 (16) 5390 (2009)
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Discrimination of Viable and Dead Fecal Bacteroidales Bacteria by Quantitative PCR with Propidium Monoazide

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Applied and Environmental Microbiology 75 (9) 2940 (2009)
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Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria

Sander Wuyts, Wannes Van Beeck, Eline F. M. Oerlemans, Stijn Wittouck, Ingmar J. J. Claes, Ilke De Boeck, Stefan Weckx, Bart Lievens, Luc De Vuyst, Sarah Lebeer and Harold L. Drake
Applied and Environmental Microbiology 84 (12) (2018)
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Environmental Stress-Induced Bacterial Lysis and Extracellular DNA Release Contribute to Campylobacter jejuni Biofilm Formation

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Applied and Environmental Microbiology 84 (5) (2018)
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Distribution of Human-Specific Bacteroidales and Fecal Indicator Bacteria in an Urban Watershed Impacted by Sewage Pollution, Determined Using RNA- and DNA-Based Quantitative PCR Assays

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Applied and Environmental Microbiology 81 (1) 91 (2015)
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Applied and Environmental Microbiology 88 (3) (2022)
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Journal of Environmental Engineering 148 (5) (2022)
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Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments

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Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes

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Insights into the microbial community of treated wastewater, its year-round variability and impact on the receiver, using cultivation, microscopy and amplicon-based methods

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Bacterial natural transformation by highly fragmented and damaged DNA

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Soil Slope Exposure Affects Physico-Chemical and Microbiological Properties in Soil Aggregate Size Fractions

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