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Applied Microbiology and Biotechnology 102 (6) 2885 (2018)
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Cell-Free DNA: An Underestimated Source of Antibiotic Resistance Gene Dissemination at the Interface Between Human Activities and Downstream Environments in the Context of Wastewater Reuse

Markus Woegerbauer, Xavier Bellanger and Christophe Merlin
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Matthew A. Barnes and Cameron R. Turner
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Zhengshuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke and Olga Zhaxybayeva
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Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link

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Enumeration of exoelectrogens in microbial fuel cell effluents fed acetate or wastewater substrates

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Fate of Environmental Proteins (eProteins) from Genetically Engineered Crops in Streams is Controlled by Water pH and Ecosystem Metabolism

Pedro F. P. Brandão-Dias, Emma J. Rosi, Arial J. Shogren, Jennifer L. Tank, David T. Fischer and Scott P. Egan
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Complementary DNA sequencing (cDNA): an effective approach for assessing the diversity and distribution of marine benthic ciliates along hydrographic gradients

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Optimization, validation, and application of a real-time PCR protocol for quantification of viable bacterial cells in municipal sewage sludge and biosolids using reporter genes and Escherichia coli

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Lina Wallmann, Jörg Krampe, Josef Lahnsteiner, Elena Radu, Pierre van Rensburg, Katarzyna Slipko, Markus Wögerbauer and Norbert Kreuzinger
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Mechanisms of ultraviolet disinfection and chlorination of Escherichia coli: Culturability, membrane permeability, metabolism, and genetic damage

Limei Xu, Chongmiao Zhang, Pengcheng Xu and Xiaochang C. Wang
Journal of Environmental Sciences 65 356 (2018)
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Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

Philip Francis Thomsen and Eske Willerslev
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Plant sedimentary DNA as a proxy for vegetation reconstruction in eastern and northern Asia

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Environmentally-relevant concentrations of Al(III) and Fe(III) cations induce aggregation of free DNA by complexation with phosphate group

Chao Qin, Fuxing Kang, Wei Zhang, Weijun Shou, Xiaojie Hu and Yanzheng Gao
Water Research 123 58 (2017)
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Using the heat generated from electrically conductive concrete slabs to reduce antibiotic resistance in beef cattle manure

Zachery R. Staley, Christopher Y. Tuan, Kent M. Eskridge and Xu Li
Science of The Total Environment 768 144220 (2021)
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Environmental dissolved DNA harbours meaningful biological information on microbial community structure

Borja Aldeguer‐Riquelme, María Dolores Ramos‐Barbero, Fernando Santos and Josefa Antón
Environmental Microbiology (2021)
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The Molecular Information About Deadwood Bacteriomes Partly Depends on the Targeted Environmental DNA

Maraike Probst, Judith Ascher-Jenull, Heribert Insam and María Gómez-Brandón
Frontiers in Microbiology 12 (2021)
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Comparison of picoeukaryote community structures and their environmental relationships between summer and autumn in the southern Chukchi Sea

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A vertically and temporally diverse bacterial community in a shallow lake-water sediment site of a eutrophic lake

Stefanos Moschos, Odysseas Piperagkas and Hera Karayanni
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Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco

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Stress-Induced, Highly Efficient, Donor Cell-Dependent Cell-to-Cell Natural Transformation in Bacillus subtilis

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Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

Aman S. Gill, Angela Lee, Krista L. McGuire and Alfons J. M. Stams
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Stress- and Growth Rate-Related Differences between Plate Count and Real-Time PCR Data during Growth of Listeria monocytogenes

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Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

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Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast‐flowing, river‐dominated estuary

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Dynamics of Whole and Lysed Bacterial Cells during Parmigiano-Reggiano Cheese Production and Ripening

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Critical considerations for the application of environmental DNA methods to detect aquatic species

Caren S. Goldberg, Cameron R. Turner, Kristy Deiner, Katy E. Klymus, Philip Francis Thomsen, Melanie A. Murphy, Stephen F. Spear, Anna McKee, Sara J. Oyler‐McCance, Robert Scott Cornman, Matthew B. Laramie, Andrew R. Mahon, Richard F. Lance, David S. Pilliod, Katherine M. Strickler, Lisette P. Waits, Alexander K. Fremier, Teruhiko Takahara, Jelger E. Herder, Pierre Taberlet and M. Gilbert
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Mita Eva Sengupta, Micaela Hellström, Henry Curtis Kariuki, Annette Olsen, Philip Francis Thomsen, Helena Mejer, Eske Willerslev, Mariam Mwanje, Henry Madsen, Thomas Krogsgaard Kristensen, Anna-Sofie Stensgaard and Birgitte Jyding Vennervald
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Olivier Laroche, Oliver Kersten, Craig R. Smith and Erica Goetze
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Extracellular DNA (eDNA): Neglected and Potential Sources of Antibiotic Resistant Genes (ARGs) in the Aquatic Environments

Periyasamy Sivalingam, John Poté and Kandasamy Prabakar
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Phillip Wang, Moustapha Harb, Ali Zarei-Baygi, Lauren B. Stadler and Adam L. Smith
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Paul Carini, Patrick J. Marsden, Jonathan W. Leff, Emily E. Morgan, Michael S. Strickland and Noah Fierer
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Effects of Microbial Activity and Environmental Parameters on the Degradation of Extracellular Environmental DNA from a Eutrophic Lake

Nur Syahidah Zulkefli, Keon-Hee Kim and Soon-Jin Hwang
International Journal of Environmental Research and Public Health 16 (18) 3339 (2019)
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Prevalence and seasonal dynamics of blaCTX-M antibiotic resistance genes and fecal indicator organisms in the lower Lahn River, Germany

Ilona Herrig, Susanne Fleischmann, Julia Regnery, Jessica Wesp, Georg Reifferscheid, Werner Manz and Axel Cloeckaert
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Nucleic acids are a major pool of hydrolyzable organic phosphorus in arable organic soils of Southern Ontario, Canada

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Pinjing He, Yizhou Zhou, Liming Shao, Jinghua Huang, Zhan Yang and Fan Lü
Science of The Total Environment 697 134176 (2019)
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Preservation of sedimentary plant DNA is related to lake water chemistry

Weihan Jia, Xingqi Liu, Kathleen R. Stoof‐Leichsenring, Sisi Liu, Kai Li and Ulrike Herzschuh
Environmental DNA 4 (2) 425 (2022)
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Effect of copper and zinc as sulfate or nitrate salts on soil microbiome dynamics and bla-positive Pseudomonas aeruginosa survival

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Journal of Hazardous Materials 415 125631 (2021)
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The state, transport, and fate of aboveground terrestrial arthropod eDNA

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Containment of a genetically modified microorganism by an activated sludge system

Andrea Nuzzo, Salvatore Puccio, Claudio Martina, Biancamaria Pietrangeli, Gonzalo A. Martinez, Lorenzo Bertin, Maurizio Mancini, Fabio Fava and Giulio Zanaroli
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Synthetic biology: Recent progress, biosafety and biosecurity concerns, and possible solutions

Fangzhong Wang and Weiwen Zhang
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Sexual Isolation in Acinetobacter baylyi Is Locus-Specific and Varies 10,000-Fold Over the Genome

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Occurrence of antibiotic resistant bacteria and resistance genes in agricultural irrigation waters from Valencia city (Spain)

Michela Amato, Diego Dasí, Ana González, María Antonia Ferrús and María Ángeles Castillo
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Use of environmental DNA in early detection of Mnemiopsis leidyi in UK coastal waters

Véronique Créach, Sabrine Derveaux, Katy R. Owen, Sophie Pitois and Elvire Antajan
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Artificial sweeteners stimulate horizontal transfer of extracellular antibiotic resistance genes through natural transformation

Zhigang Yu, Yue Wang, Ian R. Henderson and Jianhua Guo
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Blood Bacteria-Free DNA in Septic Mice Enhances LPS-Induced Inflammation in Mice through Macrophage Response

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International Journal of Molecular Sciences 23 (3) 1907 (2022)
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Survival of Host-Associated Bacteroidales Cells and Their Relationship with Enterococcus spp., Campylobacter jejuni, Salmonella enterica Serovar Typhimurium, and Adenovirus in Freshwater Microcosms as Measured by Propidium Monoazide-Quantitative PCR

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Evaluation of Different Methods for Extracting Extracellular DNA from the Biofilm Matrix

Jianfeng Wu and Chuanwu Xi
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Discrimination of Viable and Dead Fecal Bacteroidales Bacteria by Quantitative PCR with Propidium Monoazide

Sungwoo Bae and Stefan Wuertz
Applied and Environmental Microbiology 75 (9) 2940 (2009)
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Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria

Sander Wuyts, Wannes Van Beeck, Eline F. M. Oerlemans, Stijn Wittouck, Ingmar J. J. Claes, Ilke De Boeck, Stefan Weckx, Bart Lievens, Luc De Vuyst, Sarah Lebeer and Harold L. Drake
Applied and Environmental Microbiology 84 (12) (2018)
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Environmental Stress-Induced Bacterial Lysis and Extracellular DNA Release Contribute to Campylobacter jejuni Biofilm Formation

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Applied and Environmental Microbiology 84 (5) (2018)
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Distribution of Human-Specific Bacteroidales and Fecal Indicator Bacteria in an Urban Watershed Impacted by Sewage Pollution, Determined Using RNA- and DNA-Based Quantitative PCR Assays

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Extracellular DNA in Environmental Samples: Occurrence, Extraction, Quantification, and Impact on Microbial Biodiversity Assessment

Sakcham Bairoliya, Jonas Koh Zhi Xiang, Bin Cao and Isaac Cann
Applied and Environmental Microbiology 88 (3) (2022)
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Environmental DNA for improved detection and environmental surveillance of schistosomiasis

Mita E. Sengupta, Micaela Hellström, Henry C. Kariuki, Annette Olsen, Philip F. Thomsen, Helena Mejer, Eske Willerslev, Mariam T. Mwanje, Henry Madsen, Thomas K. Kristensen, Anna-Sofie Stensgaard and Birgitte J. Vennervald
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Patricia Fajardo-Cavazos, Heather Maughan, Wayne L. Nicholson, Patrick Eichenberger and Adam Driks
Microbiology Spectrum 2 (5) (2014)
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Simon P. Sawadogo, Didier A. Kabore, Ezechiel B. Tibiri, Angela Hughes, Olivier Gnankine, Shannon Quek, Abdoulaye Diabaté, Hilary Ranson, Grant L. Hughes and Roch K. Dabiré
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Lili Huang, Yehui Zhang, Xinmei Du, Ran An and Xingguo Liang
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An Extraction Method to Quantify the Fraction of Extracellular and Intracellular Antibiotic Resistance Genes in Aquatic Environments

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Journal of Environmental Engineering 148 (5) (2022)
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Simultaneous removal of antibiotic resistant bacteria and antibiotic resistance genes by molybdenum carbide assisted electrochemical disinfection

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Journal of Hazardous Materials 432 128733 (2022)
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Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments

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Water Research 217 118363 (2022)
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Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes

Toshiaki Jo, Kenta Takao and Toshifumi Minamoto
Environmental DNA 4 (2) 271 (2022)
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Insights into the microbial community of treated wastewater, its year-round variability and impact on the receiver, using cultivation, microscopy and amplicon-based methods

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Science of The Total Environment 829 154630 (2022)
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Bacterial natural transformation by highly fragmented and damaged DNA

Søren Overballe-Petersen, Klaus Harms, Ludovic A. A. Orlando, J. Victor Moreno Mayar, Simon Rasmussen, Tais W. Dahl, Minik T. Rosing, Anthony M. Poole, Thomas Sicheritz-Ponten, Søren Brunak, Sabrina Inselmann, Johann de Vries, Wilfried Wackernagel, Oliver G. Pybus, Rasmus Nielsen, Pål Jarle Johnsen, Kaare Magne Nielsen and Eske Willerslev
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Sharjeel Ahmad, Amina Mughal, Saira Abbas, Amer Mumtaz, Rabia Khalid and Iftikhar Ahmed
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Functional group substitutions influence the binding of benzophenone-type UV filters with DNA

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Chemosphere 299 134490 (2022)
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Soil Slope Exposure Affects Physico-Chemical and Microbiological Properties in Soil Aggregate Size Fractions

Tommaso Bardelli, Shamina Imran Pathan, Paola Arfaioli, Nadia Vignozzi, Sergio Pellegrini, Flavio Fornasier, Markus Egli, María Gómez-Brandón, Heribert Insam, Giacomo Pietramellara and Judith Ascher-Jenull
Land 11 (5) 750 (2022)
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