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Biology and Fertility of Soils 45 (3) 219 (2009)
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Horizontal Gene Transfer Can Rescue Prokaryotes from Muller’s Ratchet: Benefit of DNA from Dead Cells and Population Subdivision

Nobuto Takeuchi, Kunihiko Kaneko and Eugene V Koonin
G3 Genes|Genomes|Genetics 4 (2) 325 (2014)
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Is the Cry1Ab Protein from Bacillus thuringiensis (Bt) Taken Up by Plants from Soils Previously Planted with Bt Corn and by Carrot from Hydroponic Culture?

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Comparison of Leifsonia xyli subsp. xyli molecular detection in heat-treated sugarcane setts1

Vanessa Duarte Dias, Renato Carrer Filho and Marcos Gomes da Cunha
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Pseudomonas aeruginosaproduces an extracellular deoxyribonuclease that is required for utilization of DNA as a nutrient source

Heidi Mulcahy, Laetitia Charron-Mazenod and Shawn Lewenza
Environmental Microbiology (2010)
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Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment

Blaž Stres, Laurent Philippot, Jadran Faganeli and James M. Tiedje
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A new adsorption-elution technique for the concentration of aquatic extracellular antibiotic resistance genes from large volumes of water

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Results from the Workshop “Problem Formulation for the Use of Gene Drive in Mosquitoes”

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The American Journal of Tropical Medicine and Hygiene 96 (3) 530 (2017)
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Particle Size Distribution of Environmental DNA from the Nuclei of Marine Fish

Toshiaki Jo, Mio Arimoto, Hiroaki Murakami, Reiji Masuda and Toshifumi Minamoto
Environmental Science & Technology 53 (16) 9947 (2019)
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“Inhibiting inhibitors”: Preliminary results of a new “DNA extraction-amplification” disinhibition technique in critical human samples

Cláudia Gomes, Alejandro Alonso, Domingo Marquina, et al.
Forensic Science International: Genetics Supplement Series 6 e197 (2017)
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Composition of the teat canal and intramammary microbiota of dairy cows subjected to antimicrobial dry cow therapy and internal teat sealant

Hooman Derakhshani, Jan C. Plaizier, Jeroen De Buck, Herman W. Barkema and Ehsan Khafipour
Journal of Dairy Science 101 (11) 10191 (2018)
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Antimicrobial drug resistance mechanisms among Mollicutes

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Quantitative Microbial Risk Assessment of Pediatric Infections Attributable to Ingestion of Fecally Contaminated Domestic Soils in Low-Income Urban Maputo, Mozambique

Drew Capone, Aaron Bivins, Jackie Knee, Oliver Cumming, Rassul Nalá and Joe Brown
Environmental Science & Technology 55 (3) 1941 (2021)
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Membrane Fouling Inversely Impacts Intracellular and Extracellular Antibiotic Resistance Gene Abundances in the Effluent of an Anaerobic Membrane Bioreactor

Ali Zarei-Baygi, Phillip Wang, Moustapha Harb, Lauren B. Stadler and Adam L. Smith
Environmental Science & Technology 54 (19) 12742 (2020)
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Secretion of DNases by Marine Bacteria: A Culture Based and Bioinformatics Approach

Aisha S. M. Al-Wahaibi, Emilia Lapinska, Nithyalakshmy Rajarajan, et al.
Frontiers in Microbiology 10 (2019)
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Targeted DNA degradation using a CRISPR device stably carried in the host genome

Brian J. Caliando and Christopher A. Voigt
Nature Communications 6 (1) 6989 (2015)
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Antibiotics and Antibiotic Resistance in Agroecosystems: State of the Science

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Spectroscopic analysis of tylosin adsorption on extracellular DNA reveals its interaction mechanism

Qian Zhang, Qiuyan Peng, Xiaohua Shu, Deqing Mo and Dongyun Jiang
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Translational Application of Circulating DNA in Oncology: Review of the Last Decades Achievements

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Cells 8 (10) 1251 (2019)
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Microplastics act as vectors for antibiotic resistance genes in landfill leachate: The enhanced roles of the long-term aging process

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Organism migration in soils: Should we be so comfortable with diagnosing ancient infectious diseases?

Dennis F. Lawler, Basil P. Tangredi and Christopher C. Widga
International Journal of Osteoarchaeology 30 (3) 297 (2020)
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Impact of common sample pre-treatments on key soil microbial properties

Julia Schroeder, Lisa Kammann, Mirjam Helfrich, Christoph C. Tebbe and Christopher Poeplau
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Unrecognized Contributions of Dissolved Organic Matter Inducing Photodamages to the Decay of Extracellular DNA in Waters

Xin Zhang, Jing Li, Mu-Cen Yao, Wen-Yuan Fan, Chuan-Wang Yang, Li Yuan and Guo-Ping Sheng
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The Role of DNA in the Extracellular Environment: A Focus on NETs, RETs and Biofilms

Francesco Monticolo, Emanuela Palomba, Pasquale Termolino, et al.
Frontiers in Plant Science 11 (2020)
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Assessment of bathing water quality with an E. coli immunosensor

Eerik Jõgi, Ingrid Väling and Toonika Rinken
International Journal of Environmental Analytical Chemistry 1 (2020)
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Is there a spatial heterogeneous effect of willingness to pay for ecological consumption? An environmental cognitive perspective

Jianfei Li, Li Ren and Mengxia Sun
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Combined membrane filtration and 265 nm UV irradiation for effective removal of cell free antibiotic resistance genes from feed water and concentrate

Pawel Krzeminski, Edward Feys, Marc Anglès d'Auriac, et al.
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The Bacterial Spore

Patricia Fajardo-Cavazos, Heather Maughan and Wayne L. Nicholson
The Bacterial Spore 21 (2016)
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Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution

Toshiaki Jo, Hiroaki Murakami, Satoshi Yamamoto, Reiji Masuda and Toshifumi Minamoto
Ecology and Evolution 9 (3) 1135 (2019)
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Photosynthetic Picoeukaryotes Diversity in the Underlying Ice Waters of the White Sea, Russia

Tatiana A. Belevich, Ludmila V. Ilyash, Irina A. Milyutina, Maria D. Logacheva and Aleksey V. Troitsky
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Scientific Opinion on an application from Pioneer Hi‐Bred International and Dow AgroSciences LLC (EFSA‐GMO‐NL‐2005‐23) for placing on the market of genetically modified maize 59122 for food and feed uses, import, processing and cultivation under Regulation (EC) No 1829/2003

EFSA Journal 11 (3) (2013)
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A new biological definition of life

Victor V. Tetz and George V. Tetz
Biomolecular Concepts 11 (1) 1 (2020)
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Use of real-time PCR with propidium monoazide for enumeration of viable Escherichia coli in anaerobic digestion

Yu-you Li, Junichi Yaguchi, Atsushi Higashimori and Wataru Ruike
Water Science and Technology 74 (5) 1243 (2016)
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Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass

Toshiaki Jo, Mio Arimoto, Hiroaki Murakami, Reiji Masuda and Toshifumi Minamoto
Environmental DNA 2 (2) 140 (2020)
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Organic matter reduces the amount of detectable environmental DNA in freshwater

Kees Bochove, Freek T. Bakker, Kevin K. Beentjes, et al.
Ecology and Evolution 10 (8) 3647 (2020)
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Cell-Free DNA: An Underestimated Source of Antibiotic Resistance Gene Dissemination at the Interface Between Human Activities and Downstream Environments in the Context of Wastewater Reuse

Markus Woegerbauer, Xavier Bellanger and Christophe Merlin
Frontiers in Microbiology 11 (2020)
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Abalone Withering Syndrome Disease Dynamics: Infectious Dose and Temporal Stability in Seawater

Lisa M. Crosson, Nina S. Lottsfeldt, Mariah E. Weavil‐Abueg and Carolyn S. Friedman
Journal of Aquatic Animal Health 32 (2) 83 (2020)
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Organic complexation of U(VI) in reducing soils at a natural analogue site: Implications for uranium transport

Adam J. Fuller, Peter Leary, Neil D. Gray, et al.
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Effect of artificial barriers on the distribution of the invasive signal crayfish and Chinese mitten crab

Chloe Victoria Robinson, Carlos Garcia de Leaniz and Sofia Consuegra
Scientific Reports 9 (1) (2019)
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The ecology of environmental DNA and implications for conservation genetics

Matthew A. Barnes and Cameron R. Turner
Conservation Genetics 17 (1) 1 (2016)
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Environmental DNA detection of aquatic invasive plants in lab mesocosm and natural field conditions

Crysta A. Gantz, Mark A. Renshaw, Daniel Erickson, David M. Lodge and Scott P. Egan
Biological Invasions 20 (9) 2535 (2018)
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Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus

Zhengshuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke and Olga Zhaxybayeva
The ISME Journal 15 (10) 2853 (2021)
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Advances in Marine Biology

Jeff A. Eble, Toby S. Daly-Engel, Joseph D. DiBattista, Adam Koziol and Michelle R. Gaither
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Detection of Viable and Total Bacterial Community in the Pit Mud of Chinese Strong-Flavor Liquor Using Propidium Monoazide Combined With Quantitative PCR and 16S rRNA Gene Sequencing

Guangxun Tan, Rui Zhou, Wenqian Zhang, et al.
Frontiers in Microbiology 11 (2020)
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Survival of Enterococcus faecium, Staphylococcus aureus and Pseudomonas aeruginosa on cotton

Sabina Fijan, Dunja Pahor and Sonja Šostar Turk
Textile Research Journal 87 (14) 1711 (2017)
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Predicting the fate of eDNA in the environment and implications for studying biodiversity

Jori B. Harrison, Jennifer M. Sunday and Sean M. Rogers
Proceedings of the Royal Society B: Biological Sciences 286 (1915) 20191409 (2019)
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Assessment of extracellular antibiotic resistance genes (eARGs) in typical environmental samples and the transforming ability of eARG

Peiyan Dong, Hui Wang, Tingting Fang, Yun Wang and Quanhui Ye
Environment International 125 90 (2019)
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Effect of graphitic carbon nitride powders on adsorption removal of antibiotic resistance genes from water

Haiyin Zhan, Yutong Wang, Xueyue Mi, et al.
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Rapid detection of viable Cronobacter sakazakii in powdered infant formula using improved propidium monoazide (PMAxx) and quantitative recombinase polymerase amplification (qRPA) assay

Shijue Gao, Chongzhen Sun, Hanlu Hong, et al.
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Living Lithic and Sublithic Bacterial Communities in Namibian Drylands

Steffi Genderjahn, Simon Lewin, Fabian Horn, et al.
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Intracellular versus extracellular antibiotic resistance genes in the environment: Prevalence, horizontal transfer, and mitigation strategies

Ali Zarei-Baygi and Adam L. Smith
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Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning Link

Sara Fareed Mohamed Wahdan, Anna Heintz-Buschart, Chakriya Sansupa, et al.
Frontiers in Microbiology 12 (2021)
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Dissolved organic matter dominating the photodegradation of free DNA bases in aquatic environments

Jing Li, Xin Zhang, Wen-Yuan Fan, Mu-Cen Yao and Guo-Ping Sheng
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The roles of biomolecules in corrosion induction and inhibition of corrosion: a possible insight

Santosh Kumar Karn, Anne Bhambri, Ian R. Jenkinson, Jizhou Duan and Awanish Kumar
Corrosion Reviews 38 (5) 403 (2020)
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Adaptation through genetic time travel? Fluctuating selection can drive the evolution of bacterial transformation

Jan Engelstädter and Danesh Moradigaravand
Proceedings of the Royal Society B: Biological Sciences 281 (1775) 20132609 (2014)
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Mikkel Winther Pedersen, Søren Overballe-Petersen, Luca Ermini, et al.
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Assessing the fate of brown trout (Salmo trutta) environmental DNA in a natural stream using a sensitive and specific dual-labelled probe

Björn Deutschmann, Anne-Kathrin Müller, Henner Hollert and Markus Brinkmann
Science of The Total Environment 655 321 (2019)
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Immediate- and Short-term Wildfire Impact on Soil Microbial Diversity and Activity in a Mediterranean Forest Soil

Federica Borgogni, Anna Lavecchia, Giovanni Mastrolonardo, et al.
Soil Science 184 (2) 35 (2019)
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Anaerobic digestion reduces extracellular antibiotic resistance genes in waste activated sludge: The effects of temperature and degradation mechanisms

Yina Zou, Weiming Tu, Hui Wang and Tingting Fang
Environment International 143 105980 (2020)
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Relative contributions of different substrates to soil N2O emission and their responses to N addition in a temperate forest

Bo Peng, Jianfei Sun, Jun Liu, Zongwei Xia and Weiwei Dai
Science of The Total Environment 767 144126 (2021)
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Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses

Toshiaki Jo and Toshifumi Minamoto
Molecular Ecology Resources 21 (5) 1490 (2021)
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The effect of crop species on DNase-producing bacteria in two soils

Leila N. Kamino and Robert H. Gulden
Annals of Microbiology 71 (1) (2021)
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Selective collection of long fragments of environmental DNA using larger pore size filter

Toshiaki Jo, Hiroaki Murakami, Reiji Masuda and Toshifumi Minamoto
Science of The Total Environment 735 139462 (2020)
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Shubham Deshmukh, Rucha Kulkarni and Kakoli Bose
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Persistence of Xanthomonas campestris pv. campestris in Field Soil in Central Europe

Filip Gazdik, Samuel Magnus, Steven J. Roberts, et al.
Microorganisms 9 (3) 591 (2021)
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In and out—contribution of natural transformation to the shuffling of large genomic regions

Melanie Blokesch
Current Opinion in Microbiology 38 22 (2017)
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Enumeration of exoelectrogens in microbial fuel cell effluents fed acetate or wastewater substrates

Kyoung-Yeol Kim, Ruggero Rossi, John M. Regan and Bruce E. Logan
Biochemical Engineering Journal 165 107816 (2021)
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Fate of Environmental Proteins (eProteins) from Genetically Engineered Crops in Streams is Controlled by Water pH and Ecosystem Metabolism

Pedro F. P. Brandão-Dias, Emma J. Rosi, Arial J. Shogren, Jennifer L. Tank, David T. Fischer and Scott P. Egan
Environmental Science & Technology 55 (8) 4688 (2021)
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Complementary DNA sequencing (cDNA): an effective approach for assessing the diversity and distribution of marine benthic ciliates along hydrographic gradients

Pingping Huang, Feng Zhao and Kuidong Xu
Journal of Oceanology and Limnology 39 (1) 208 (2021)
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Optimization, validation, and application of a real-time PCR protocol for quantification of viable bacterial cells in municipal sewage sludge and biosolids using reporter genes and Escherichia coli

Jessica K van Frankenhuyzen, Jack T Trevors, Cecily A Flemming, Hung Lee and Marc B Habash
Journal of Industrial Microbiology and Biotechnology 40 (11) 1251 (2013)
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Fate and persistence of antibiotic-resistant bacteria and genes through a multi-barrier treatment facility for direct potable reuse

Lina Wallmann, Jörg Krampe, Josef Lahnsteiner, Elena Radu, Pierre van Rensburg, Katarzyna Slipko, Markus Wögerbauer and Norbert Kreuzinger
Journal of Water Reuse and Desalination 11 (3) 373 (2021)
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Mechanisms of ultraviolet disinfection and chlorination of Escherichia coli: Culturability, membrane permeability, metabolism, and genetic damage

Limei Xu, Chongmiao Zhang, Pengcheng Xu and Xiaochang C. Wang
Journal of Environmental Sciences 65 356 (2018)
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Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

Philip Francis Thomsen and Eske Willerslev
Biological Conservation 183 4 (2015)
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Plant sedimentary DNA as a proxy for vegetation reconstruction in eastern and northern Asia

Kai Li, Kathleen R. Stoof-Leichsenring, Sisi Liu, Weihan Jia, Mengna Liao, Xingqi Liu, Jian Ni and Ulrike Herzschuh
Ecological Indicators 132 108303 (2021)
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Environmentally-relevant concentrations of Al(III) and Fe(III) cations induce aggregation of free DNA by complexation with phosphate group

Chao Qin, Fuxing Kang, Wei Zhang, Weijun Shou, Xiaojie Hu and Yanzheng Gao
Water Research 123 58 (2017)
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Using the heat generated from electrically conductive concrete slabs to reduce antibiotic resistance in beef cattle manure

Zachery R. Staley, Christopher Y. Tuan, Kent M. Eskridge and Xu Li
Science of The Total Environment 768 144220 (2021)
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The Molecular Information About Deadwood Bacteriomes Partly Depends on the Targeted Environmental DNA

Maraike Probst, Judith Ascher-Jenull, Heribert Insam and María Gómez-Brandón
Frontiers in Microbiology 12 (2021)
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Comparison of picoeukaryote community structures and their environmental relationships between summer and autumn in the southern Chukchi Sea

Fang Zhang, Jianfeng He, Haiyan Jin, et al.
Extremophiles 25 (3) 235 (2021)
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A vertically and temporally diverse bacterial community in a shallow lake-water sediment site of a eutrophic lake

Stefanos Moschos, Odysseas Piperagkas and Hera Karayanni
Inland Waters 11 (2) 141 (2021)
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Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco

Alessandra Pontiroli, Aurora Rizzi, Pascal Simonet, Daniele Daffonchio, Timothy M. Vogel and Jean-Michel Monier
Applied and Environmental Microbiology 75 (10) 3314 (2009)
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Stress-Induced, Highly Efficient, Donor Cell-Dependent Cell-to-Cell Natural Transformation in Bacillus subtilis

Xiaoming Zhang, Tingting Jin, Liping Deng, et al.
Journal of Bacteriology 200 (17) (2018)
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Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

Aman S. Gill, Angela Lee, Krista L. McGuire and Alfons J. M. Stams
Applied and Environmental Microbiology 83 (16) (2017)
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Stress- and Growth Rate-Related Differences between Plate Count and Real-Time PCR Data during Growth of Listeria monocytogenes

Franziska Reichert-Schwillinsky, Carmen Pin, Monika Dzieciol, Martin Wagner and Ingeborg Hein
Applied and Environmental Microbiology 75 (7) 2132 (2009)
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Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

Caterina R. Giner, Irene Forn, Sarah Romac, Ramiro Logares, Colomban de Vargas and Ramon Massana
Applied and Environmental Microbiology 82 (15) 4757 (2016)
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Microbial players and processes involved in phytoplankton bloom utilization in the water column of a fast‐flowing, river‐dominated estuary

Maria W. Smith, Lydie Herfort, Caroline S. Fortunato, Byron C. Crump and Holly M. Simon
MicrobiologyOpen 6 (4) (2017)
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Dynamics of Whole and Lysed Bacterial Cells during Parmigiano-Reggiano Cheese Production and Ripening

Monica Gatti, Juliano De Dea Lindner, Angela De Lorentiis, Benedetta Bottari, Marcela Santarelli, Valentina Bernini and Erasmo Neviani
Applied and Environmental Microbiology 74 (19) 6161 (2008)
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Critical considerations for the application of environmental DNA methods to detect aquatic species

Caren S. Goldberg, Cameron R. Turner, Kristy Deiner, Katy E. Klymus, Philip Francis Thomsen, Melanie A. Murphy, Stephen F. Spear, Anna McKee, Sara J. Oyler‐McCance, Robert Scott Cornman, Matthew B. Laramie, Andrew R. Mahon, Richard F. Lance, David S. Pilliod, Katherine M. Strickler, Lisette P. Waits, Alexander K. Fremier, Teruhiko Takahara, Jelger E. Herder, Pierre Taberlet and M. Gilbert
Methods in Ecology and Evolution 7 (11) 1299 (2016)
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Mita Eva Sengupta, Micaela Hellström, Henry Curtis Kariuki, Annette Olsen, Philip Francis Thomsen, Helena Mejer, Eske Willerslev, Mariam Mwanje, Henry Madsen, Thomas Krogsgaard Kristensen, Anna-Sofie Stensgaard and Birgitte Jyding Vennervald
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Olivier Laroche, Oliver Kersten, Craig R. Smith and Erica Goetze
DOI: 10.1101/2020.05.07.082602
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Extracellular DNA (eDNA): Neglected and Potential Sources of Antibiotic Resistant Genes (ARGs) in the Aquatic Environments

Periyasamy Sivalingam, John Poté and Kandasamy Prabakar
Pathogens 9 (11) 874 (2020)
DOI: 10.3390/pathogens9110874
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Phillip Wang, Moustapha Harb, Ali Zarei-Baygi, Lauren B. Stadler and Adam L. Smith
DOI: 10.1101/702076
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Paul Carini, Patrick J. Marsden, Jonathan W. Leff, Emily E. Morgan, Michael S. Strickland and Noah Fierer
DOI: 10.1101/043372
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Effects of Microbial Activity and Environmental Parameters on the Degradation of Extracellular Environmental DNA from a Eutrophic Lake

Nur Syahidah Zulkefli, Keon-Hee Kim and Soon-Jin Hwang
International Journal of Environmental Research and Public Health 16 (18) 3339 (2019)
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Prevalence and seasonal dynamics of blaCTX-M antibiotic resistance genes and fecal indicator organisms in the lower Lahn River, Germany

Ilona Herrig, Susanne Fleischmann, Julia Regnery, Jessica Wesp, Georg Reifferscheid, Werner Manz and Axel Cloeckaert
PLOS ONE 15 (4) e0232289 (2020)
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Flow cytometric quantification of viruses in activated sludge

M.R. Brown, S. Camézuli, R.J. Davenport, E. Petelenz-Kurdziel, L. Øvreås and T.P. Curtis
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Nucleic acids are a major pool of hydrolyzable organic phosphorus in arable organic soils of Southern Ontario, Canada

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Preservation of sedimentary plant DNA is related to lake water chemistry

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James P. J. Hall, João Botelho, Adrian Cazares and David A. Baltrus
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Andrea Nuzzo, Salvatore Puccio, Claudio Martina, Biancamaria Pietrangeli, Gonzalo A. Martinez, Lorenzo Bertin, Maurizio Mancini, Fabio Fava and Giulio Zanaroli
New Biotechnology 55 58 (2020)
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Synthetic biology: Recent progress, biosafety and biosecurity concerns, and possible solutions

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Sexual Isolation in Acinetobacter baylyi Is Locus-Specific and Varies 10,000-Fold Over the Genome

Jessica L Ray, Klaus Harms, Odd-Gunnar Wikmark, Irina Starikova, Pål J Johnsen and Kaare M Nielsen
Genetics 182 (4) 1165 (2009)
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Occurrence of antibiotic resistant bacteria and resistance genes in agricultural irrigation waters from Valencia city (Spain)

Michela Amato, Diego Dasí, Ana González, María Antonia Ferrús and María Ángeles Castillo
Agricultural Water Management 256 107097 (2021)
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Use of environmental DNA in early detection of Mnemiopsis leidyi in UK coastal waters

Véronique Créach, Sabrine Derveaux, Katy R. Owen, Sophie Pitois and Elvire Antajan
Biological Invasions 24 (2) 415 (2022)
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Artificial sweeteners stimulate horizontal transfer of extracellular antibiotic resistance genes through natural transformation

Zhigang Yu, Yue Wang, Ian R. Henderson and Jianhua Guo
The ISME Journal 16 (2) 543 (2022)
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Estimating decay kinetic parameters and persistence of bacteria in water is essential for future modelling

Dolores Gutiérrez-Cacciabue and Verónica Beatriz Rajal
Chemical Engineering Research and Design 179 175 (2022)
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Unearthing soil arthropod diversity through DNA metabarcoding

Monica R. Young and Paul D. N. Hebert
PeerJ 10 e12845 (2022)
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Blood Bacteria-Free DNA in Septic Mice Enhances LPS-Induced Inflammation in Mice through Macrophage Response

Warerat Kaewduangduen, Peerapat Visitchanakun, Wilasinee Saisorn, Ariya Phawadee, Charintorn Manonitnantawat, Chirapas Chutimaskul, Paweena Susantitaphong, Patcharee Ritprajak, Naraporn Somboonna, Thanya Cheibchalard, Dhammika Leshan Wannigama, Patipark Kueanjinda and Asada Leelahavanichkul
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Survival of Host-Associated Bacteroidales Cells and Their Relationship with Enterococcus spp., Campylobacter jejuni, Salmonella enterica Serovar Typhimurium, and Adenovirus in Freshwater Microcosms as Measured by Propidium Monoazide-Quantitative PCR

Sungwoo Bae and Stefan Wuertz
Applied and Environmental Microbiology 78 (4) 922 (2012)
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Evaluation of Different Methods for Extracting Extracellular DNA from the Biofilm Matrix

Jianfeng Wu and Chuanwu Xi
Applied and Environmental Microbiology 75 (16) 5390 (2009)
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Discrimination of Viable and Dead Fecal Bacteroidales Bacteria by Quantitative PCR with Propidium Monoazide

Sungwoo Bae and Stefan Wuertz
Applied and Environmental Microbiology 75 (9) 2940 (2009)
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Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria

Sander Wuyts, Wannes Van Beeck, Eline F. M. Oerlemans, Stijn Wittouck, Ingmar J. J. Claes, Ilke De Boeck, Stefan Weckx, Bart Lievens, Luc De Vuyst, Sarah Lebeer and Harold L. Drake
Applied and Environmental Microbiology 84 (12) (2018)
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Environmental Stress-Induced Bacterial Lysis and Extracellular DNA Release Contribute to Campylobacter jejuni Biofilm Formation

Jinsong Feng, Lina Ma, Jiatong Nie, Michael E. Konkel, Xiaonan Lu and Christopher A. Elkins
Applied and Environmental Microbiology 84 (5) (2018)
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Distribution of Human-Specific Bacteroidales and Fecal Indicator Bacteria in an Urban Watershed Impacted by Sewage Pollution, Determined Using RNA- and DNA-Based Quantitative PCR Assays

Vikram Kapoor, Tarja Pitkänen, Hodon Ryu, Michael Elk, David Wendell, Jorge W. Santo Domingo and C. A. Elkins
Applied and Environmental Microbiology 81 (1) 91 (2015)
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Extracellular DNA in Environmental Samples: Occurrence, Extraction, Quantification, and Impact on Microbial Biodiversity Assessment

Sakcham Bairoliya, Jonas Koh Zhi Xiang, Bin Cao and Isaac Cann
Applied and Environmental Microbiology 88 (3) (2022)
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Environmental DNA for improved detection and environmental surveillance of schistosomiasis

Mita E. Sengupta, Micaela Hellström, Henry C. Kariuki, Annette Olsen, Philip F. Thomsen, Helena Mejer, Eske Willerslev, Mariam T. Mwanje, Henry Madsen, Thomas K. Kristensen, Anna-Sofie Stensgaard and Birgitte J. Vennervald
Proceedings of the National Academy of Sciences 116 (18) 8931 (2019)
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Evolution in the Bacillaceae

Patricia Fajardo-Cavazos, Heather Maughan, Wayne L. Nicholson, Patrick Eichenberger and Adam Driks
Microbiology Spectrum 2 (5) (2014)
DOI: 10.1128/microbiolspec.TBS-0020-2014
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Simon P. Sawadogo, Didier A. Kabore, Ezechiel B. Tibiri, Angela Hughes, Olivier Gnankine, Shannon Quek, Abdoulaye Diabaté, Hilary Ranson, Grant L. Hughes and Roch K. Dabiré
DOI: 10.1101/2022.03.05.483130
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Lili Huang, Yehui Zhang, Xinmei Du, Ran An and Xingguo Liang
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Abundance, diversity, and host assignment of total, intracellular, and extracellular antibiotic resistance genes in riverbed sediments

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Water Research 217 118363 (2022)
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Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes

Toshiaki Jo, Kenta Takao and Toshifumi Minamoto
Environmental DNA 4 (2) 271 (2022)
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Insights into the microbial community of treated wastewater, its year-round variability and impact on the receiver, using cultivation, microscopy and amplicon-based methods

Agnieszka Kalinowska, Mattia Pierpaoli, Katarzyna Jankowska, Sylwia Fudala-Ksiazek, Anna Remiszewska-Skwarek and Aneta Łuczkiewicz
Science of The Total Environment 829 154630 (2022)
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Bacterial natural transformation by highly fragmented and damaged DNA

Søren Overballe-Petersen, Klaus Harms, Ludovic A. A. Orlando, J. Victor Moreno Mayar, Simon Rasmussen, Tais W. Dahl, Minik T. Rosing, Anthony M. Poole, Thomas Sicheritz-Ponten, Søren Brunak, Sabrina Inselmann, Johann de Vries, Wilfried Wackernagel, Oliver G. Pybus, Rasmus Nielsen, Pål Jarle Johnsen, Kaare Magne Nielsen and Eske Willerslev
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Sharjeel Ahmad, Amina Mughal, Saira Abbas, Amer Mumtaz, Rabia Khalid and Iftikhar Ahmed
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Soil Slope Exposure Affects Physico-Chemical and Microbiological Properties in Soil Aggregate Size Fractions

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Land 11 (5) 750 (2022)
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Thomas F. Ducey, Changyoon Jeong and Kyoung S Ro
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Species‐specific DNA distribution in spruce–beech forest soil

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Environmental DNA 4 (5) 1120 (2022)
DOI: 10.1002/edn3.307
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Effects of Extracellular Self- and Nonself-DNA on the Freshwater Microalga Chlamydomonas reinhardtii and on the Marine Microalga Nannochloropsis gaditana

Emanuela Palomba, Pasquale Chiaiese, Pasquale Termolino, Rosa Paparo, Edgardo Filippone, Stefano Mazzoleni and Maria Luisa Chiusano
Plants 11 (11) 1436 (2022)
DOI: 10.3390/plants11111436
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A Dual Enrichment Strategy Provides Soil- and Digestate-Competent Nitrous Oxide-Respiring Bacteria for Mitigating Climate Forcing in Agriculture

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mBio 13 (3) (2022)
DOI: 10.1128/mbio.00788-22
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Intra-/extra-cellular antibiotic resistance responses to sewage sludge composting and salinization of long-term compost applied soils

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DOI: 10.1016/j.scitotenv.2022.156263
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Viral Surrogates in Potable Reuse Applications: Evaluation of a Membrane Bioreactor and Full Advanced Treatment

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An Extraction Method to Quantify the Fraction of Extracellular and Intracellular Antibiotic Resistance Genes in Aquatic Environments

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Journal of Environmental Engineering 148 (5) (2022)
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Escherichia coli Can Eat DNA as an Excellent Nitrogen Source to Grow Quickly

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DOI: 10.3389/fmicb.2022.894849
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Cascade Filtration With PCR Detection and Field-Flow-Fractionation Online With ICP-MS for the Characterization of DNA Interaction With Suspended Particulate Matter

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Molecular Identification of Cervical Microbes in HIV-Negative and HIV-Positive Women in an African Setting Using a Customized Bacterial Vaginosis Microbial DNA Quantitative PCR (qPCR) Array

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Ground cover and slope exposure effects on micro- and mesobiota in forest soils

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Ecological Indicators 80 174 (2017)
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Microbial Diversity in Groundwater and Its Response to Seawater Intrusion in Beihai City, Southern China

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Frontiers in Microbiology 13 (2022)
DOI: 10.3389/fmicb.2022.876665
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A Carotenoid- and Nuclease-Producing Bacterium Can Mitigate Enterococcus faecalis Transformation by Antibiotic Resistance Genes

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Analysis of the Persistence and Particle Size Distributional Shift of Sperm-Derived Environmental DNA to Monitor Jack Mackerel Spawning Activity

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Current advances of biocontainment strategy in synthetic biology

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Horizontal Gene Transfer of an IncP1 Plasmid to Soil Bacterial Community Introduced by Escherichia coli through Manure Amendment in Soil Microcosms

Gonçalo Macedo, Asmus K. Olesen, Lorrie Maccario, Lucia Hernandez Leal, Peter v. d. Maas, Dick Heederik, Dik Mevius, Søren J. Sørensen and Heike Schmitt
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Environmental fate and behaviour of antibiotic resistance genes and small interference RNAs released from genetically modified crops

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DOI: 10.1111/jam.15741
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Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects

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Science of The Total Environment 847 157556 (2022)
DOI: 10.1016/j.scitotenv.2022.157556
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Bacteriophages: Underestimated vehicles of antibiotic resistance genes in the soil

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Frontiers in Microbiology 13 (2022)
DOI: 10.3389/fmicb.2022.936267
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Lack of robust evidence for a Wolbachia infection in Anopheles gambiae from Burkina Faso

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Medical and Veterinary Entomology 36 (3) 301 (2022)
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Dynamics, gene transfer, and ecological function of intracellular and extracellular DNA in environmental microbiome

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iMeta 1 (3) (2022)
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Sedimentary ancient DNA reveals past ecosystem and biodiversity changes on the Tibetan Plateau: Overview and prospects

Weihan Jia, Sten Anslan, Fahu Chen, Xianyong Cao, Hailiang Dong, Katharina Dulias, Zhengquan Gu, Liv Heinecke, Hongchen Jiang, Stefan Kruse, Wengang Kang, Kai Li, Sisi Liu, Xingqi Liu, Ying Liu, Jian Ni, Antje Schwalb, Kathleen R. Stoof-Leichsenring, Wei Shen, Fang Tian, Jing Wang, Yongbo Wang, Yucheng Wang, Hai Xu, Xiaoyan Yang, Dongju Zhang and Ulrike Herzschuh
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Why eDNA fractions need consideration in biomonitoring

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Effect of Calcium Ion Supplementation on Oral Microbial Composition and Biofilm Formation In Vitro

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Microorganisms 10 (9) 1780 (2022)
DOI: 10.3390/microorganisms10091780
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Denitrification‐Driven Transcription and Enzyme Production at the River‐Groundwater Interface: Insights From Reactive‐Transport Modeling

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Water Resources Research 58 (8) (2022)
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Carl-Eric Wegner, Raphaela Stahl, Irina Velsko, Alex Hübner, Zandra Fagernäs, Christina Warinner, Robert Lehmann, Thomas Ritschel, Kai U. Totsche and Kirsten Küsel
DOI: 10.1101/2022.09.23.509128
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Correlation between the number of eDNA particles and species abundance is strengthened by warm temperature: simulation and meta-analysis

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Binding of phthalates with nuclease increases DNA enzymatic degradation and implication for antibiotic resistance

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Environmental Chemistry Letters (2022)
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Functional group substitutions influence the binding of benzophenone-type UV filters with DNA

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Chemosphere 299 134490 (2022)
DOI: 10.1016/j.chemosphere.2022.134490
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Simultaneous removal of antibiotic resistant bacteria and antibiotic resistance genes by molybdenum carbide assisted electrochemical disinfection

Hao Fang, Yinghan Liu, Pengxiang Qiu, Hai-Liang Song, Tao Liu, Jianhua Guo and Shuai Zhang
Journal of Hazardous Materials 432 128733 (2022)
DOI: 10.1016/j.jhazmat.2022.128733
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Solid-liquid interface adsorption of antibiotic resistance plasmids induced by nanoplastics aggravates gene pollution in aquatic ecosystems

Zhiheng Li, Mengjun Wang, Hong Fang, Zhangchao Yao, Huijun Liu, Wenlu Zhao and Jie Chen
Environmental Pollution 316 120456 (2023)
DOI: 10.1016/j.envpol.2022.120456
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Persistence and degradation dynamics of eDNA affected by environmental factors in aquatic ecosystems

Chipuriro Joseph, Mohammad Eshaq Faiq, Zhengyan Li and Gang Chen
Hydrobiologia 849 (19) 4119 (2022)
DOI: 10.1007/s10750-022-04959-w
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Environmental dissolved DNA harbours meaningful biological information on microbial community structure

Borja Aldeguer‐Riquelme, María Dolores Ramos‐Barbero, Fernando Santos and Josefa Antón
Environmental Microbiology 23 (5) 2669 (2021)
DOI: 10.1111/1462-2920.15510
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The Origin, Function, Distribution, Quantification, and Research Advances of Extracellular DNA

Kaixin Yang, Lishuang Wang, Xinghong Cao, Zhaorui Gu, Guowei Zhao, Mengqu Ran, Yunjun Yan, Jinyong Yan, Li Xu, Chunhui Gao and Min Yang
International Journal of Molecular Sciences 23 (22) 13690 (2022)
DOI: 10.3390/ijms232213690
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M. Martínez-Quintela, D. Calderón-Franco, M. C. M. van Loosdrecht, S. Suárez, F. Omil and D. G. Weissbrodt
DOI: 10.1101/2022.11.14.516377
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Fates of intracellular and extracellular antibiotic resistance genes during sludge anaerobic digestion with different pretreatments

Yina Zou, Weiming Tu, Menghan Wu, Xinning Liu and Hui Wang
Chemical Engineering Journal 454 140356 (2023)
DOI: 10.1016/j.cej.2022.140356
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