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Results from the Workshop “Problem Formulation for the Use of Gene Drive in Mosquitoes”
Andrew Roberts, Paulo Paes de Andrade, Fredros Okumu, et al. The American Journal of Tropical Medicine and Hygiene 96(3) 530 (2017) https://doi.org/10.4269/ajtmh.16-0726
Research on Gene Mobility and Gene Flow Between Genetically Modified Mon 15985 Cotton and Pleurotus Ostreatus
Ying Shang, Yan Yan, Wentao Xu, Wenying Tian and Kunlun Huang Journal of Food Safety 36(3) 423 (2016) https://doi.org/10.1111/jfs.12267
Antibiotics and Antibiotic Resistance in Agroecosystems: State of the Science
Jessica Williams-Nguyen, J. Brett Sallach, Shannon Bartelt-Hunt, et al. Journal of Environmental Quality 45(2) 394 (2016) https://doi.org/10.2134/jeq2015.07.0336
Persistence of naturally occurring antibiotic resistance genes in the bacteria and bacteriophage fractions of wastewater
Recognizing false positives: synthetic oligonucleotide controls for environmental DNA surveillance
Chris C. Wilson, Kristyne M. Wozney, Caleigh M. Smith and Douglas Yu Methods in Ecology and Evolution 7(1) 23 (2016) https://doi.org/10.1111/2041-210X.12452
Critical considerations for the application of environmental DNA methods to detect aquatic species
Caren S. Goldberg, Cameron R. Turner, Kristy Deiner, Katy E. Klymus, Philip Francis Thomsen, Melanie A. Murphy, Stephen F. Spear, Anna McKee, Sara J. Oyler‐McCance, Robert Scott Cornman, Matthew B. Laramie, Andrew R. Mahon, Richard F. Lance, David S. Pilliod, Katherine M. Strickler, Lisette P. Waits, Alexander K. Fremier, Teruhiko Takahara, Jelger E. Herder, Pierre Taberlet and M. Gilbert Methods in Ecology and Evolution 7(11) 1299 (2016) https://doi.org/10.1111/2041-210X.12595
The role of extracellular DNA in uranium precipitation and biomineralisation
Joseph Hufton, John H. Harding and Maria E. Romero-González Physical Chemistry Chemical Physics 18(42) 29101 (2016) https://doi.org/10.1039/C6CP03239G
Molecular microbiology methods for environmental diagnosis
Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes
Caterina R. Giner, Irene Forn, Sarah Romac, Ramiro Logares, Colomban de Vargas and Ramon Massana Applied and Environmental Microbiology 82(15) 4757 (2016) https://doi.org/10.1128/AEM.00560-16
Genetic Engineering and Sustainable Crop Disease Management: Opportunities for Case-by-Case Decision-Making
An Improved Quantitative Real-Time PCR Assay for the Enumeration of Heterosigma akashiwo (Raphidophyceae) Cysts Using a DNA Debris Removal Method and a Cyst-Based Standard Curve
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
Paul Carini, Patrick J. Marsden, Jonathan W. Leff, Emily E. Morgan, Michael S. Strickland and Noah Fierer Nature Microbiology 2(3) (2016) https://doi.org/10.1038/nmicrobiol.2016.242
N2 Gas Flushing Alleviates the Loss of Bacterial Diversity and Inhibits Psychrotrophic Pseudomonas during the Cold Storage of Bovine Raw Milk
Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments
Patrick J. Kearns, John H. Angell, Evan M. Howard, Linda A. Deegan, Rachel H. R. Stanley and Jennifer L. Bowen Nature Communications 7(1) (2016) https://doi.org/10.1038/ncomms12881
Use of real-time PCR with propidium monoazide for enumeration of viable Escherichia coli in anaerobic digestion
Yu-you Li, Junichi Yaguchi, Atsushi Higashimori and Wataru Ruike Water Science and Technology 74(5) 1243 (2016) https://doi.org/10.2166/wst.2016.327
Evidence of adaptation, niche separation and microevolution within the genus Polaromonas on Arctic and Antarctic glacial surfaces
Antibiotic resistance genes as an emerging environmental contaminant
Haley Sanderson, Colin Fricker, R. Stephen Brown, Anna Majury and Steven N. Liss Environmental Reviews 24(2) 205 (2016) https://doi.org/10.1139/er-2015-0069
Environmental Sensing of Heavy Metals Through Whole Cell Microbial Biosensors: A Synthetic Biology Approach
Lara Tess Bereza-Malcolm, Gülay Mann and Ashley Edwin Franks ACS Synthetic Biology 4(5) 535 (2015) https://doi.org/10.1021/sb500286r
Ancient and modern environmental DNA
Mikkel Winther Pedersen, Søren Overballe-Petersen, Luca Ermini, et al. Philosophical Transactions of the Royal Society B: Biological Sciences 370(1660) 20130383 (2015) https://doi.org/10.1098/rstb.2013.0383
Targeted DNA degradation using a CRISPR device stably carried in the host genome
Inhibitory effects of extracellular self‐DNA: a general biological process?
Stefano Mazzoleni, Fabrizio Cartenì, Giuliano Bonanomi, Mauro Senatore, Pasquale Termolino, Francesco Giannino, Guido Incerti, Max Rietkerk, Virginia Lanzotti and Maria Luisa Chiusano New Phytologist 206(1) 127 (2015) https://doi.org/10.1111/nph.13306
The microbiome of the built environment and mental health
Andrew J. Hoisington, Lisa A. Brenner, Kerry A. Kinney, Teodor T. Postolache and Christopher A. Lowry Microbiome 3(1) (2015) https://doi.org/10.1186/s40168-015-0127-0
Detection of viable bacterial pathogens in a drinking water source using propidium monoazide-quantitative PCR
Avid Banihashemi, Michele I. Van Dyke and Peter M. Huck Journal of Water Supply: Research and Technology-Aqua 64(2) 139 (2015) https://doi.org/10.2166/aqua.2014.063
Mitochondrial Genome Sequencing and Development of Genetic Markers for the Detection of DNA of Invasive Bighead and Silver Carp (Hypophthalmichthys nobilis and H. molitrix) in Environmental Water Samples from the United States
Distribution of Human-Specific Bacteroidales and Fecal Indicator Bacteria in an Urban Watershed Impacted by Sewage Pollution, Determined Using RNA- and DNA-Based Quantitative PCR Assays
Vikram Kapoor, Tarja Pitkänen, Hodon Ryu, Michael Elk, David Wendell, Jorge W. Santo Domingo and C. A. Elkins Applied and Environmental Microbiology 81(1) 91 (2015) https://doi.org/10.1128/AEM.02446-14
Rapid Differentiation of Listeria monocytogenes Epidemic Clones III and IV and Their Intact Compared with Heat‐Killed Populations Using Fourier Transform Infrared Spectroscopy and Chemometrics
Adaptation through genetic time travel? Fluctuating selection can drive the evolution of bacterial transformation
Jan Engelstädter and Danesh Moradigaravand Proceedings of the Royal Society B: Biological Sciences 281(1775) 20132609 (2014) https://doi.org/10.1098/rspb.2013.2609
Decay of genetic markers for fecal bacterial indicators and pathogens in sand from Lake Superior
Environmental Conditions Influence eDNA Persistence in Aquatic Systems
Matthew A. Barnes, Cameron R. Turner, Christopher L. Jerde, Mark A. Renshaw, W. Lindsay Chadderton and David M. Lodge Environmental Science & Technology 48(3) 1819 (2014) https://doi.org/10.1021/es404734p
Persistence of Extracellular DNA in River Sediment Facilitates Antibiotic Resistance Gene Propagation
Daqing Mao, Yi Luo, Jacques Mathieu, Qing Wang, Ling Feng, Quanhua Mu, Chunyan Feng and P. J. J. Alvarez Environmental Science & Technology 48(1) 71 (2014) https://doi.org/10.1021/es404280v
Detecting the Nonviable and Heat-Tolerant Bacteria in Activated Sludge by Minimizing DNA from Dead Cells
Phylogenetic Differences in Attached and Free-Living Bacterial Communities in a Temperate Coastal Lagoon during Summer, Revealed via High-Throughput 16S rRNA Gene Sequencing
Vani Mohit, Philippe Archambault, Nicolas Toupoint, Connie Lovejoy and K. E. Wommack Applied and Environmental Microbiology 80(7) 2071 (2014) https://doi.org/10.1128/AEM.02916-13
Influence of Calcium in Extracellular DNA Mediated Bacterial Aggregation and Biofilm Formation
A Distinguishable Role of eDNA in the Viscoelastic Relaxation of Biofilms
Brandon W. Peterson, Henny C. van der Mei, Jelmer Sjollema, Henk J. Busscher, Prashant K. Sharma, Matthew Chapman and Scott J. Hultgren mBio 4(5) (2013) https://doi.org/10.1128/mBio.00497-13
The roles of extracellular DNA in the structural integrity of extracellular polymeric substance and bacterial biofilm development
Bacterial natural transformation by highly fragmented and damaged DNA
Søren Overballe-Petersen, Klaus Harms, Ludovic A. A. Orlando, J. Victor Moreno Mayar, Simon Rasmussen, Tais W. Dahl, Minik T. Rosing, Anthony M. Poole, Thomas Sicheritz-Ponten, Søren Brunak, Sabrina Inselmann, Johann de Vries, Wilfried Wackernagel, Oliver G. Pybus, Rasmus Nielsen, Pål Jarle Johnsen, Kaare Magne Nielsen and Eske Willerslev Proceedings of the National Academy of Sciences 110(49) 19860 (2013) https://doi.org/10.1073/pnas.1315278110
The Evolution of Natural Competence: Disentangling Costs and Benefits of Sex in Bacteria
Development of a methodology for the application of synthetic DNA in stream tracer injection experiments
Jan Willem Foppen, Judith Seopa, Noel Bakobie and Thom Bogaard Water Resources Research 49(9) 5369 (2013) https://doi.org/10.1002/wrcr.20438
Optimization, validation, and application of a real-time PCR protocol for quantification of viable bacterial cells in municipal sewage sludge and biosolids using reporter genes and Escherichia coli
Jessica K van Frankenhuyzen, Jack T Trevors, Cecily A Flemming, Hung Lee and Marc B Habash Journal of Industrial Microbiology and Biotechnology 40(11) 1251 (2013) https://doi.org/10.1007/s10295-013-1319-x
Scientific Opinion on an application from Pioneer Hi‐Bred International and Dow AgroSciences LLC (EFSA‐GMO‐NL‐2005‐23) for placing on the market of genetically modified maize 59122 for food and feed uses, import, processing and cultivation under Regulation (EC) No 1829/2003
Use of a genetically-engineered Escherichia coli strain as a sample process control for quantification of the host-specific bacterial genetic markers
Ayano Kobayashi, Daisuke Sano, Asami Taniuchi, Satoshi Ishii and Satoshi Okabe Applied Microbiology and Biotechnology 97(20) 9165 (2013) https://doi.org/10.1007/s00253-013-5188-z
Fake virus particles generated by fluorescence microscopy
Patrick Forterre, Nicolas Soler, Mart Krupovic, Evelyne Marguet and Hans-W. Ackermann Trends in Microbiology 21(1) 1 (2013) https://doi.org/10.1016/j.tim.2012.10.005
Extracellular dGMP Enhances Deinococcus radiodurans Tolerance to Oxidative Stress
FRIEDERIKE BIENERT, SÉBASTIEN DE DANIELI, CHRISTIAN MIQUEL, ERIC COISSAC, CAROLE POILLOT, JEAN‐JACQUES BRUN and PIERRE TABERLET Molecular Ecology 21(8) 2017 (2012) https://doi.org/10.1111/j.1365-294X.2011.05407.x
Factors Driving Potential Ammonia Oxidation in Canadian Arctic Ecosystems: Does Spatial Scale Matter?
Extracellular DNA Release by Undomesticated Bacillus subtilis Is Regulated by Early Competence
Olga Zafra, María Lamprecht-Grandío, Carolina González de Figueras, José Eduardo González-Pastor and Tarek Msadek PLoS ONE 7(11) e48716 (2012) https://doi.org/10.1371/journal.pone.0048716
Impacts of gene bioaugmentation with pJP4-harboring bacteria of 2,4-D-contaminated soil slurry on the indigenous microbial community
Survival of Host-Associated Bacteroidales Cells and Their Relationship with Enterococcus spp., Campylobacter jejuni, Salmonella enterica Serovar Typhimurium, and Adenovirus in Freshwater Microcosms as Measured by Propidium Monoazide-Quantitative PCR
Exposure of DNA and Bacillus subtilis Spores to Simulated Martian Environments: Use of Quantitative PCR (qPCR) to Measure Inactivation Rates of DNA to Function as a Template Molecule